8VOH

HADDOCK models of human alphaM I-domain bound to the the N-terminal domain of the cytokine pleiotrophin


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D F1-13C-edited/F3-13C,15N-filtered HSQCNOESY0.2 mM [U-13C; U-15N] human alphaM I-domain, 1 mM The N-terminal domain of pleiotrophin90% H2O/10% D2O0.1 M71 atm298Bruker AVANCE III HD 850
23D HCCH-TOCSY0.5 mM [U-13C; U-15N] human alphaM I-domain90% H2O/10% D2O0.1 M71 atm298Bruker AVANCE III HD 850
33D HCCH-TOCSY0.5 mM [U-13C; U-15N] The N-terminal domain of pleiotrophin90% H2O/10% D2O0.1 M71 atm298Bruker AVANCE III HD 850
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III HD850
NMR Refinement
MethodDetailsSoftware
simulated annealingThe Integrin alpha-M starting structure is 1JLM. The Pleiotrophin starting structure is 2N6F.HADDOCK
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number200
Conformers Submitted Total Number10
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1chemical shift assignmentNMRViewJBruce Johnson
2structure calculationHADDOCKBonvin