8VOH
HADDOCK models of human alphaM I-domain bound to the the N-terminal domain of the cytokine pleiotrophin
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D F1-13C-edited/F3-13C,15N-filtered HSQCNOESY | 0.2 mM [U-13C; U-15N] human alphaM I-domain, 1 mM The N-terminal domain of pleiotrophin | 90% H2O/10% D2O | 0.1 M | 7 | 1 atm | 298 | Bruker AVANCE III HD 850 |
2 | 3D HCCH-TOCSY | 0.5 mM [U-13C; U-15N] human alphaM I-domain | 90% H2O/10% D2O | 0.1 M | 7 | 1 atm | 298 | Bruker AVANCE III HD 850 |
3 | 3D HCCH-TOCSY | 0.5 mM [U-13C; U-15N] The N-terminal domain of pleiotrophin | 90% H2O/10% D2O | 0.1 M | 7 | 1 atm | 298 | Bruker AVANCE III HD 850 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III HD | 850 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | The Integrin alpha-M starting structure is 1JLM. The Pleiotrophin starting structure is 2N6F. | HADDOCK |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (target function) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | NMRViewJ | Bruce Johnson | |
2 | structure calculation | HADDOCK | Bonvin |