8UEK
Solution structure of ACKR3-targeting nanobody VUN701
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 25 mM [U-100% 2H] MES, 0.75 mM [U-98% 13C; U-98% 15N] VUN701, 0.02 % v/v sodium azide | 95% H2O/5% D2O | 20 mM | 6.8 | 1 atm | 298 | Bruker AVANCE III HD 600 |
2 | 3D 1H-13C NOESY aliphatic | 25 mM [U-100% 2H] MES, 0.75 mM [U-98% 13C; U-98% 15N] VUN701, 0.02 % v/v sodium azide | 95% H2O/5% D2O | 20 mM | 6.8 | 1 atm | 298 | Bruker AVANCE III HD 600 |
3 | 2D 1H-13C HSQC aromatic | 25 mM [U-100% 2H] MES, 0.75 mM [U-98% 13C; U-98% 15N] VUN701, 0.02 % v/v sodium azide | 95% H2O/5% D2O | 20 mM | 6.8 | 1 atm | 298 | Bruker AVANCE III HD 600 |
4 | 3D HNCO | 25 mM [U-100% 2H] MES, 0.75 mM [U-98% 13C; U-98% 15N] VUN701, 0.02 % v/v sodium azide | 95% H2O/5% D2O | 20 mM | 6.8 | 1 atm | 298 | Bruker AVANCE III HD 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III HD | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (target function) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | 3.6 | Bruker Biospin |
2 | data analysis | NMRPipe | 9.6 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |
3 | data analysis | XEASY | 1.3.13 | Bartels et al. |
4 | chemical shift assignment | GARANT | 2.2 | Bartels, Guntert, Billeter and Wuthrich |
6 | refinement | CYANA | 3.0 | Guntert, Mumenthaler and Wuthrich |
5 | geometry optimization | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
7 | structure calculation | CYANA | Guntert, Mumenthaler and Wuthrich |