8UEK

Solution structure of ACKR3-targeting nanobody VUN701


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-15N NOESY25 mM [U-100% 2H] MES, 0.75 mM [U-98% 13C; U-98% 15N] VUN701, 0.02 % v/v sodium azide95% H2O/5% D2O20 mM6.81 atm298Bruker AVANCE III HD 600
23D 1H-13C NOESY aliphatic25 mM [U-100% 2H] MES, 0.75 mM [U-98% 13C; U-98% 15N] VUN701, 0.02 % v/v sodium azide95% H2O/5% D2O20 mM6.81 atm298Bruker AVANCE III HD 600
32D 1H-13C HSQC aromatic25 mM [U-100% 2H] MES, 0.75 mM [U-98% 13C; U-98% 15N] VUN701, 0.02 % v/v sodium azide95% H2O/5% D2O20 mM6.81 atm298Bruker AVANCE III HD 600
43D HNCO25 mM [U-100% 2H] MES, 0.75 mM [U-98% 13C; U-98% 15N] VUN701, 0.02 % v/v sodium azide95% H2O/5% D2O20 mM6.81 atm298Bruker AVANCE III HD 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III HD600
NMR Refinement
MethodDetailsSoftware
torsion angle dynamicsCYANA
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.6Bruker Biospin
2data analysisNMRPipe9.6Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3data analysisXEASY1.3.13Bartels et al.
4chemical shift assignmentGARANT2.2Bartels, Guntert, Billeter and Wuthrich
6refinementCYANA3.0Guntert, Mumenthaler and Wuthrich
5geometry optimizationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
7structure calculationCYANAGuntert, Mumenthaler and Wuthrich