8SDE

Electrostatic-Mediated Tetramerization of the Coiled-Coil Domain in TRIM29


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
otherOtherone helix with 40 alanines

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION4.729510% glycerol, 38% MPD, and 0.1M Acetic acid pH4.7
Crystal Properties
Matthews coefficientSolvent content
2.754.5

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 45.05α = 90
b = 47.63β = 90
c = 107.51γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-05-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.10.97741ALS5.0.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.27896.90.0710.99914.59.15400
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.272.3998.80.3190.9858.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2.277.981539439295.7570.230.22670.275186.024
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
5.3012.596-7.897
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.127
r_dihedral_angle_3_deg20.319
r_dihedral_angle_4_deg18.121
r_lrange_it17.273
r_scangle_it16.004
r_scbond_it10.714
r_mcangle_it7.953
r_mcbond_it6.261
r_dihedral_angle_1_deg4.247
r_angle_refined_deg1.785
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.127
r_dihedral_angle_3_deg20.319
r_dihedral_angle_4_deg18.121
r_lrange_it17.273
r_scangle_it16.004
r_scbond_it10.714
r_mcangle_it7.953
r_mcbond_it6.261
r_dihedral_angle_1_deg4.247
r_angle_refined_deg1.785
r_nbtor_refined0.306
r_nbd_refined0.23
r_symmetry_nbd_refined0.226
r_symmetry_xyhbond_nbd_refined0.189
r_chiral_restr0.108
r_xyhbond_nbd_refined0.076
r_bond_refined_d0.008
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms744
Nucleic Acid Atoms
Solvent Atoms15
Heterogen Atoms12

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHENIXphasing