8RQ6
Solution NMR structure of Amyloid beta precursor like protein 2 TMD
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 0.5 uM NA APLP2 | trifluoroethanol/water | 0 | 6.5 | 1 atm | 300 | Bruker AVANCE III 600 |
2 | 2D 1H-13C HSQC | 0.5 uM NA APLP2 | trifluoroethanol/water | 0 | 6.5 | 1 atm | 300 | Bruker AVANCE III 600 |
3 | 2D 1H-15N HSQC | 0.5 uM NA APLP2 | trifluoroethanol/water | 0 | 6.5 | 1 atm | 300 | Bruker AVANCE III 600 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE III | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | ARIA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 400 |
Conformers Submitted Total Number | 40 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | CcpNmr Analysis | 2.4.2 | CCPN |
2 | peak picking | CcpNmr Analysis | 2.4.2 | CCPN |
3 | structure calculation | ARIA | 2.3.2 | Linge, O'Donoghue and Nilges |
4 | refinement | ARIA | 2.3.2 | Linge, O'Donoghue and Nilges |