8RQ6
Solution NMR structure of Amyloid beta precursor like protein 2 TMD
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-1H NOESY | 0.5 uM NA APLP2 | trifluoroethanol/water | 0 | 6.5 | 1 atm | 300 | Bruker AVANCE III 600 |
| 2 | 2D 1H-13C HSQC | 0.5 uM NA APLP2 | trifluoroethanol/water | 0 | 6.5 | 1 atm | 300 | Bruker AVANCE III 600 |
| 3 | 2D 1H-15N HSQC | 0.5 uM NA APLP2 | trifluoroethanol/water | 0 | 6.5 | 1 atm | 300 | Bruker AVANCE III 600 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| simulated annealing | ARIA | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 400 |
| Conformers Submitted Total Number | 40 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | CcpNmr Analysis | 2.4.2 | CCPN |
| 2 | peak picking | CcpNmr Analysis | 2.4.2 | CCPN |
| 3 | structure calculation | ARIA | 2.3.2 | Linge, O'Donoghue and Nilges |
| 4 | refinement | ARIA | 2.3.2 | Linge, O'Donoghue and Nilges |
