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X-ray structure of acetylcholine-binding protein (AChBP) in complex with FL003044.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UV6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 PEG3350 3%
Ammonium sulphate 1.8M
HEPES buffer 0.1M, pH 7.75
Crystal Properties Matthews coefficient Solvent content 2.04 39.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.25 α = 90 b = 120.64 β = 90 c = 240.01 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2020-07-22 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.979499 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 48.16 99.96 0.1136 1 16.4 13.8 174607
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.968 0.491
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 47.31 165856 8730 99.98 0.21872 0.21737 0.2246 0.24405 0.2483 RANDOM 44.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.26 -1.58 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.589 r_dihedral_angle_4_deg 17.004 r_dihedral_angle_3_deg 12.672 r_long_range_B_refined 9.193 r_long_range_B_other 9.193 r_dihedral_angle_1_deg 7.383 r_scangle_other 6.873 r_mcangle_it 5.175 r_mcangle_other 5.175 r_scbond_it 4.586
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.589 r_dihedral_angle_4_deg 17.004 r_dihedral_angle_3_deg 12.672 r_long_range_B_refined 9.193 r_long_range_B_other 9.193 r_dihedral_angle_1_deg 7.383 r_scangle_other 6.873 r_mcangle_it 5.175 r_mcangle_other 5.175 r_scbond_it 4.586 r_scbond_other 4.586 r_mcbond_it 3.625 r_mcbond_other 3.625 r_angle_refined_deg 1.46 r_angle_other_deg 1.271 r_chiral_restr 0.06 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16140 Nucleic Acid Atoms Solvent Atoms 647 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement PHASER phasing XSCALE data scaling XDS data reduction