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Crystal structure of Aurora A 122-403 C290A, N332A, Q335A, C393A bound to ADP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4CEG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 PEG 1000, PEG 3350, MPD, MOPS, Hepes, Magnesium chloride, Calcium chloride
Crystal Properties Matthews coefficient Solvent content 3.1 60.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.49 α = 90 b = 83.49 β = 90 c = 116.57 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2022-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 47.791 100 1 20.3 14.1 29889
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2.021 100 0.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.97 47.791 29825 1501 99.983 0.186 0.1837 0.1908 0.2354 0.2375 61.375
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.853 -1.853 3.706
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.41 r_dihedral_angle_3_deg 15.008 r_dihedral_angle_2_deg 10.419 r_lrange_it 9.578 r_lrange_other 9.571 r_scangle_it 7.962 r_scangle_other 7.959 r_dihedral_angle_1_deg 6.432 r_scbond_it 5.607 r_scbond_other 5.603
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.41 r_dihedral_angle_3_deg 15.008 r_dihedral_angle_2_deg 10.419 r_lrange_it 9.578 r_lrange_other 9.571 r_scangle_it 7.962 r_scangle_other 7.959 r_dihedral_angle_1_deg 6.432 r_scbond_it 5.607 r_scbond_other 5.603 r_mcangle_other 4.255 r_mcangle_it 4.252 r_mcbond_it 3.478 r_mcbond_other 3.451 r_angle_refined_deg 1.451 r_dihedral_angle_other_2_deg 1.413 r_angle_other_deg 0.477 r_symmetry_nbd_refined 0.221 r_nbd_refined 0.205 r_symmetry_xyhbond_nbd_refined 0.198 r_symmetry_nbd_other 0.189 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.176 r_nbd_other 0.168 r_symmetry_nbtor_other 0.081 r_chiral_restr 0.07 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2151 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling REFMAC phasing