8IP2

Escherichia coli OpgG mutant-D361N with beta-1,2-glucan

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1TXK

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP		293	MMT (pH 5.0), PEG400

Crystal Properties
Matthews coefficient	Solvent content
2.3	46.42

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 62.821	α = 90
b = 80.97	β = 90
c = 213.225	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 S 6M		2021-07-04	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE BL-5A	1.0	Photon Factory	BL-5A

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.81	48.34	99.9	0.999	17.2	6.4		50021

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.81	1.85			0.891

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.81	48.34	49959	2535	99.876	0.215	0.2134	0.254	41.948

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.123			-0.075		0.198

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.452
r_dihedral_angle_4_deg	18.251
r_dihedral_angle_3_deg	15.08
r_rigid_bond_restr	13.057
r_dihedral_angle_1_deg	7.457
r_angle_other_deg	3.379
r_angle_refined_deg	1.719
r_lrange_other	0.723
r_lrange_it	0.721
r_mcangle_other	0.498
r_mcangle_it	0.491
r_scangle_it	0.482
r_scangle_other	0.482
r_mcbond_other	0.294
r_scbond_it	0.286
r_scbond_other	0.286
r_mcbond_it	0.28
r_nbd_other	0.239
r_symmetry_nbd_other	0.23
r_nbd_refined	0.201
r_nbtor_refined	0.177
r_xyhbond_nbd_refined	0.148
r_symmetry_xyhbond_nbd_refined	0.146
r_symmetry_nbd_refined	0.142
r_symmetry_nbtor_other	0.115
r_chiral_restr	0.098
r_bond_other_d	0.034
r_symmetry_xyhbond_nbd_other	0.025
r_gen_planes_other	0.016
r_bond_refined_d	0.014
r_gen_planes_refined	0.009
r_xyhbond_nbd_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3819
Nucleic Acid Atoms
Solvent Atoms	122
Heterogen Atoms	177

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
MOLREP	phasing