☰ Navigation Tabs
Structure of L289F Hyoscyamine 6-beta Hydroxylase in complex with vanadyl, succinate, and 6-OH-hyoscyamine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6TTM 6TTM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 PEG 3350, sodium formate, strontium chloride
Crystal Properties Matthews coefficient Solvent content 2.17 43.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.915 α = 90 b = 79.102 β = 111.248 c = 56.276 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2021-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 50 99.7 0.213 0.137 0.971 6.63 3.8 23863
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.07 1.715 1.102 0.118 0.82
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 6TTM 2.03 43.752 22581 1200 95.002 0.203 0.2011 0.2093 0.2495 0.2508 24.662
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.009 -0.038
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.682 r_dihedral_angle_3_deg 13.758 r_dihedral_angle_4_deg 11.797 r_dihedral_angle_1_deg 6.553 r_lrange_it 3.453 r_lrange_other 3.409 r_mcangle_it 1.893 r_mcangle_other 1.893 r_scangle_it 1.892 r_scangle_other 1.891
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.682 r_dihedral_angle_3_deg 13.758 r_dihedral_angle_4_deg 11.797 r_dihedral_angle_1_deg 6.553 r_lrange_it 3.453 r_lrange_other 3.409 r_mcangle_it 1.893 r_mcangle_other 1.893 r_scangle_it 1.892 r_scangle_other 1.891 r_angle_refined_deg 1.187 r_angle_other_deg 1.108 r_mcbond_it 1.09 r_mcbond_other 1.089 r_scbond_it 1.086 r_scbond_other 1.085 r_symmetry_nbd_refined 0.196 r_nbd_refined 0.188 r_xyhbond_nbd_refined 0.178 r_nbd_other 0.167 r_symmetry_nbd_other 0.162 r_nbtor_refined 0.158 r_symmetry_metal_ion_refined 0.13 r_metal_ion_refined 0.126 r_symmetry_nbtor_other 0.072 r_symmetry_xyhbond_nbd_refined 0.061 r_chiral_restr 0.05 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2589 Nucleic Acid Atoms Solvent Atoms 101 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHASER phasing