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Structure of the FK1 domain of the FKBP51 G64S variant in complex with (2R,5S,12R)-12-cyclohexyl-2-[2-(3,4-dimethoxyphenyl)ethyl]-15,15,16-trimethyl-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0^5,^10]tetracosa-1(24),20,22-triene-4,11,14,17-tetrone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7AWF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 30% PEG3350 0.2M ammonium acetate 0.1 M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.31 46.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.575 α = 90 b = 50.42 β = 90 c = 59.073 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2021-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 38.35 95.2 0.052 0.061 0.032 1 16.5 6.6 50803
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.12 0.781 0.92 0.483 0.745 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 7AWF 1.1 29.554 50756 2537 94.784 0.141 0.1397 0.1604 0.1586 12.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.398 1.71 0.688
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.351 r_rigid_bond_restr 14.333 r_dihedral_angle_3_deg 11.984 r_dihedral_angle_1_deg 7.955 r_dihedral_angle_2_deg 6.353 r_lrange_it 5.503 r_lrange_other 4.561 r_scangle_it 4.248 r_scangle_other 4.245 r_scbond_it 4.221
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.351 r_rigid_bond_restr 14.333 r_dihedral_angle_3_deg 11.984 r_dihedral_angle_1_deg 7.955 r_dihedral_angle_2_deg 6.353 r_lrange_it 5.503 r_lrange_other 4.561 r_scangle_it 4.248 r_scangle_other 4.245 r_scbond_it 4.221 r_scbond_other 4.217 r_mcangle_it 3.563 r_mcangle_other 3.561 r_mcbond_it 3.276 r_mcbond_other 3.276 r_angle_refined_deg 1.77 r_chiral_restr_other 1.181 r_angle_other_deg 1.013 r_nbd_refined 0.263 r_symmetry_nbd_refined 0.259 r_nbd_other 0.204 r_xyhbond_nbd_refined 0.201 r_symmetry_nbd_other 0.186 r_nbtor_refined 0.18 r_symmetry_xyhbond_nbd_refined 0.168 r_chiral_restr 0.108 r_symmetry_nbtor_other 0.084 r_gen_planes_refined 0.014 r_bond_refined_d 0.013 r_bond_other_d 0.005 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 975 Nucleic Acid Atoms Solvent Atoms 221 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement XDS data scaling XDS data reduction PHASER phasing