8A9F | pdb_00008a9f

X-RAY DIFFRACTION

Serial Crystallography (SX)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5FGT

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	7	293	0.8 M NA, K TARTRATE, 0.1 M NA HEPES PH 7.0, BATCH MODE, TEMPERATURE 293K

Crystal Properties
Matthews coefficient	Solvent content
2.87	57.2

Symmetry
Space Group	P 41 21 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293	PIXEL	CS-PAD CXI-1		2016-04-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	FREE ELECTRON LASER	SLAC LCLS BEAMLINE CXI	1.338	SLAC LCLS	CXI

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1		injection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	R Split (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.88	23.12	100	0.955	0.219	3.5	1		21989

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	R Split (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.88	1.93		100	0.426	0.97	1.2

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	FOURIER SYNTHESIS	FREE R-VALUE	5FGT	1.88	22.67	21918	1022	90.939	0.174	0.1727	0.1822	0.2038	0.2139	24.826

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.251			0.251		-0.502

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.911
r_dihedral_angle_1_deg	20.12
r_dihedral_angle_4_deg	16.587
r_dihedral_angle_3_deg	13.825
r_dihedral_angle_other_3_deg	7.723
r_lrange_it	6.994
r_lrange_other	6.806
r_scangle_other	5.211
r_scangle_it	5.209
r_scbond_other	3.36

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.911
r_dihedral_angle_1_deg	20.12
r_dihedral_angle_4_deg	16.587
r_dihedral_angle_3_deg	13.825
r_dihedral_angle_other_3_deg	7.723
r_lrange_it	6.994
r_lrange_other	6.806
r_scangle_other	5.211
r_scangle_it	5.209
r_scbond_other	3.36
r_scbond_it	3.355
r_mcangle_it	2.959
r_mcangle_other	2.958
r_mcbond_it	2.009
r_mcbond_other	1.932
r_angle_refined_deg	1.659
r_angle_other_deg	1.42
r_symmetry_nbd_refined	0.215
r_nbd_other	0.208
r_xyhbond_nbd_refined	0.197
r_nbd_refined	0.196
r_symmetry_nbd_other	0.185
r_nbtor_refined	0.175
r_symmetry_xyhbond_nbd_refined	0.166
r_symmetry_nbtor_other	0.08
r_chiral_restr	0.068
r_bond_refined_d	0.012
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1550
Nucleic Acid Atoms
Solvent Atoms	132
Heterogen Atoms	10

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.