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The Crystal Structure of FAK2 from Biortus.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5TO8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2M LiCl2, 0.1M Tris pH8.0, 20% PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.33 47.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.797 α = 90 b = 59.132 β = 95.033 c = 67.295 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-09-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.953732 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 44.384 99.8 0.084 13.7 6.9 23394
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 0.701
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.9 44.384 23378 1141 99.782 0.172 0.1693 0.1804 0.2298 0.2493 28.469
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.822 -1.269 1.868 0.175
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.993 r_dihedral_angle_3_deg 14.911 r_dihedral_angle_6_deg 14.879 r_dihedral_angle_other_2_deg 12.534 r_lrange_it 7.719 r_lrange_other 7.7 r_scangle_it 6.441 r_scangle_other 6.439 r_dihedral_angle_1_deg 5.777 r_scbond_it 4.045
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.993 r_dihedral_angle_3_deg 14.911 r_dihedral_angle_6_deg 14.879 r_dihedral_angle_other_2_deg 12.534 r_lrange_it 7.719 r_lrange_other 7.7 r_scangle_it 6.441 r_scangle_other 6.439 r_dihedral_angle_1_deg 5.777 r_scbond_it 4.045 r_scbond_other 4.044 r_mcangle_other 3.636 r_mcangle_it 3.634 r_mcbond_it 2.68 r_mcbond_other 2.674 r_angle_refined_deg 1.398 r_angle_other_deg 0.48 r_symmetry_nbd_refined 0.272 r_nbd_refined 0.214 r_nbd_other 0.198 r_nbtor_refined 0.186 r_symmetry_nbd_other 0.183 r_xyhbond_nbd_refined 0.166 r_symmetry_xyhbond_nbd_refined 0.163 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2115 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 47
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing