8XBG

Human GPR34 -Gi complex bound to S3E-LysoPS, receptor focused


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined56.464
r_long_range_B_other56.461
r_scangle_other42.461
r_mcangle_it40.177
r_mcangle_other40.166
r_dihedral_angle_2_deg28.41
r_mcbond_other28.069
r_mcbond_it28.066
r_scbond_it27.892
r_scbond_other27.882
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined56.464
r_long_range_B_other56.461
r_scangle_other42.461
r_mcangle_it40.177
r_mcangle_other40.166
r_dihedral_angle_2_deg28.41
r_mcbond_other28.069
r_mcbond_it28.066
r_scbond_it27.892
r_scbond_other27.882
r_dihedral_angle_4_deg16.614
r_dihedral_angle_3_deg14.9
r_dihedral_angle_1_deg4.581
r_angle_other_deg1.654
r_angle_refined_deg1.548
r_chiral_restr0.096
r_bond_refined_d0.014
r_gen_planes_refined0.009
r_gen_planes_other0.003
r_bond_other_d
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Human GPR34-Gi complex bound to S3E-LysoPS, receptor focused
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles79925
Reported Resolution (Å)3.43
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeGATAN K3 (6k x 4k)
Electron Dose (electrons/Å**2)50
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)500
Maximum Defocus (nm)2500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION