X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2930.1M Hepes pH7.0, 15% PEG 20000
Crystal Properties
Matthews coefficientSolvent content
2.3447.38

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.676α = 90
b = 143.632β = 95.83
c = 60.228γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 9M2022-12-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONCLSI BEAMLINE 08ID-10.953719CLSI08ID-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.6547.8899.90.1496.919469
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.652.780.888

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2.6546.0491944294899.8460.2420.2390.30970
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-9.519-0.933-5.54114.938
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg10.292
r_dihedral_angle_6_deg9.437
r_lrange_it5.545
r_lrange_other5.54
r_dihedral_angle_1_deg4.664
r_mcangle_it3.122
r_mcangle_other3.121
r_dihedral_angle_2_deg2.659
r_scangle_it2.45
r_scangle_other2.45
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg10.292
r_dihedral_angle_6_deg9.437
r_lrange_it5.545
r_lrange_other5.54
r_dihedral_angle_1_deg4.664
r_mcangle_it3.122
r_mcangle_other3.121
r_dihedral_angle_2_deg2.659
r_scangle_it2.45
r_scangle_other2.45
r_mcbond_it1.76
r_mcbond_other1.759
r_scbond_it1.331
r_scbond_other1.331
r_angle_refined_deg0.637
r_angle_other_deg0.231
r_symmetry_nbd_other0.172
r_nbd_refined0.171
r_nbtor_refined0.164
r_symmetry_xyhbond_nbd_refined0.115
r_xyhbond_nbd_refined0.114
r_nbd_other0.106
r_symmetry_nbtor_other0.072
r_symmetry_nbd_refined0.046
r_chiral_restr0.032
r_chiral_restr_other0.03
r_bond_refined_d0.002
r_bond_other_d0.002
r_gen_planes_refined0.002
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4559
Nucleic Acid Atoms
Solvent Atoms72
Heterogen Atoms16

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing