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crystal structure of the Pcryo_0619 N-acetryltransferase from Psychrobacter cryohalolentis K5 in the presence of CoA-disulfide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 Protein incubated with 2 mM coenzyme A.
Precipitant: 23-26% pentaerythritol ethoxylate (3/4 EO/OH), 100 mM MES (pH 6)
Crystal Properties Matthews coefficient Solvent content 3.24 62.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.903 α = 90 b = 114.903 β = 90 c = 114.903 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2019-08-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9792 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 98.3 0.079 52 8.5 19728
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 97.9 0.47 2.1 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 40.62 18711 1017 98.28 0.20459 0.20242 0.24211 0.2555 RANDOM 52.283
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.488 r_dihedral_angle_3_deg 14.953 r_long_range_B_other 9.267 r_long_range_B_refined 9.247 r_scangle_other 8.055 r_dihedral_angle_1_deg 6.851 r_scbond_it 5.756 r_scbond_other 5.753 r_mcangle_it 5.04 r_mcangle_other 5.038
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 20.488 r_dihedral_angle_3_deg 14.953 r_long_range_B_other 9.267 r_long_range_B_refined 9.247 r_scangle_other 8.055 r_dihedral_angle_1_deg 6.851 r_scbond_it 5.756 r_scbond_other 5.753 r_mcangle_it 5.04 r_mcangle_other 5.038 r_mcbond_it 4.218 r_mcbond_other 4.214 r_angle_refined_deg 1.49 r_angle_other_deg 0.507 r_chiral_restr 0.066 r_gen_planes_refined 0.008 r_bond_refined_d 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1339 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms 96
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling SHELXDE phasing