8U3M

The FARFAR-MD-NMR ensemble of an HIV-1 TAR excited state


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-13C HSQC aromatic1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR90% H2O/10% D2O25 mM6.41 atm298Bruker AVANCE 600
22D 1H-13C HSQC aromatic1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR90% H2O/10% D2O25 mM6.41 atm298Bruker AVANCE 600
32D 1H-13C HSQC sugar1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR90% H2O/10% D2O25 mM6.41 atm298Bruker AVANCE 600
42D 1H-13C HSQC sugar1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR90% H2O/10% D2O25 mM6.41 atm298Bruker AVANCE 600
52D 1H-15N HSQC1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR90% H2O/10% D2O25 mM6.41 atm298Bruker AVANCE 600
62D 1H-15N HSQC1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR90% H2O/10% D2O25 mM6.41 atm298Bruker AVANCE 600
72D 1H-1H NOESY1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR90% H2O/10% D2O25 mM6.41 atm298Bruker AVANCE 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE600
NMR Refinement
MethodDetailsSoftware
simulated annealingFARFAR-MD-NMRAmber
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number10
Conformers Submitted Total Number10
Representative Model1 (target function)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
2structure calculationRosettaHonglue Shi
3refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman