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The FARFAR-MD-NMR ensemble of an HIV-1 TAR excited state
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-13C HSQC aromatic 1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 2 2D 1H-13C HSQC aromatic 1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 3 2D 1H-13C HSQC sugar 1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 4 2D 1H-13C HSQC sugar 1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 5 2D 1H-15N HSQC 1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 6 2D 1H-15N HSQC 1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600 7 2D 1H-1H NOESY 1 mM [U-100% 13C; U-100% 15N] UUCGES2_TAR 90% H2O/10% D2O 25 mM 6.4 1 atm 298 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software simulated annealing FARFAR-MD-NMR Amber
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 1 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 2 structure calculation Rosetta Honglue Shi 3 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman