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C-terminal LRRK2 bound to E11 DARPin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6VP7
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 4.919 f_angle_d 0.774 f_chiral_restr 0.045 f_plane_restr 0.005 f_bond_d 0.004
Sample C-terminal LRRK2 bound to E11 DARPin
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 185601 Reported Resolution (Å) 3.7 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (6VP7) Refinement Space REAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 52
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TALOS ARCTICA Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 36000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION Topaz 0.2.5 IMAGE ACQUISITION Leginon CTF CORRECTION CTFFIND 4.0 MODEL FITTING UCSF ChimeraX 1.5 INITIAL EULER ASSIGNMENT cryoSPARC 4.0 FINAL EULER ASSIGNMENT cryoSPARC 4.0 RECONSTRUCTION cryoSPARC 4.0 MODEL REFINEMENT PHENIX 1.20
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 341041