8TT7

NMR Assignments and Structure for the Dimeric Kinesin Neck Domain


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-15N HSQC0.75 mM [U-15N] Kinesin_neck90% H2O/10% D2O150 mM6.11 atm310Varian INOVA 600
23D HNCACB0.75 mM [U-13C; U-15N] Kinesin_neck90% H2O/10% D2O150 mM6.11 atm310Varian INOVA 600
33D HNCA0.75 mM [U-13C; U-15N] Kinesin_neck90% H2O/10% D2O150 mM6.11 atm310Varian INOVA 600
43D HN(CO)CA0.75 mM [U-13C; U-15N] Kinesin_neck90% H2O/10% D2O150 mM6.11 atm310Varian INOVA 600
53D 1H-15N TOCSY0.75 mM [U-15N] Kinesin_neck90% H2O/10% D2O150 mM6.11 atm310Varian INOVA 600
63D 1H-15N NOESY0.75 mM [U-15N] Kinesin_neck90% H2O/10% D2O150 mM6.11 atm310Varian INOVA 600
72D 1H-13C HSQC0.75 mM [U-13C; U-15N] Kinesin_neck100% D2O150 mM6.11 atm310Bruker AVANCE NEO 600
83D HCACO0.75 mM [U-13C; U-15N] Kinesin_neck100% D2O150 mM6.11 atm310Bruker AVANCE 500
93D HCCH-TOCSY0.75 mM [U-13C; U-15N] Kinesin_neck100% D2O150 mM6.11 atm310Bruker AVANCE NEO 600
103D 1H-13C NOESY0.75 mM [U-13C; U-15N] Kinesin_neck100% D2O150 mM6.11 atm310Bruker AVANCE NEO 600
11Hydrogen Exchange N-HSQC0.75 mM [U-15N] Kinesin_neck100% D2O150 mM6.11 atm296Varian INOVA 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2BrukerAVANCE NEO600
3BrukerAVANCE500
NMR Refinement
MethodDetailsSoftware
simulated annealingsa.inp script of X-Plor NIH tutorial followed by 3 cycles of refine.inp (from X-PLOR NIH). Structures with no violations selected for next round. multiple cycles of prot_sa_refine.inp from this site (https://nesgwiki.chem.buffalo.edu/index.php/Structure_Refinement_Using_XPLOR-NIH) until no violations. Structures have no differences the human eye can see but have better PDB quality bars.X-PLOR NIH
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number20
Representative Model1 (closest to the average)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
5processingIn-house / customiNMR from MNova
6processingNMRPipeDelaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
7processingFelixAccelrys Software Inc.
2structure calculationX-PLOR NIHSchwieters, Kuszewski, Tjandra and Clore
3chemical shift assignmentCcpNmr AnalysisCCPN
4peak pickingCcpNmr AnalysisCCPN
8collectionVnmrJVarian
9collectionTopSpinBruker Biospin
10data analysisCcpNmr AnalysisCCPN