8TI4

monovalent bispecific IgG antibodies through novel electrostatic steering mutations at the CH1-CL interface


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4UB0 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION2930.1 M Bis-Tris at pH 6.5, 25% w/v PEG 3350
Crystal Properties
Matthews coefficientSolvent content
2.4249.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 71.269α = 90
b = 78.815β = 90
c = 80.925γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2022-02-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL14-10.97946SSRLBL14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1239.41389.40.9894.83.896578
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.030.662

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.139.4132709994199.3880.2020.20070.251435.899
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.562-2.6513.213
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.506
r_dihedral_angle_3_deg15.308
r_dihedral_angle_2_deg13.168
r_dihedral_angle_1_deg7.687
r_lrange_it7.039
r_lrange_other7.024
r_scangle_it5.254
r_scangle_other5.253
r_mcangle_it4.081
r_mcangle_other4.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg16.506
r_dihedral_angle_3_deg15.308
r_dihedral_angle_2_deg13.168
r_dihedral_angle_1_deg7.687
r_lrange_it7.039
r_lrange_other7.024
r_scangle_it5.254
r_scangle_other5.253
r_mcangle_it4.081
r_mcangle_other4.08
r_scbond_it3.475
r_scbond_other3.473
r_mcbond_it2.784
r_mcbond_other2.784
r_angle_refined_deg1.379
r_angle_other_deg0.46
r_nbd_other0.268
r_xyhbond_nbd_refined0.255
r_symmetry_nbd_other0.217
r_nbd_refined0.204
r_symmetry_xyhbond_nbd_refined0.185
r_nbtor_refined0.178
r_symmetry_nbd_refined0.107
r_symmetry_nbtor_other0.088
r_chiral_restr0.058
r_symmetry_xyhbond_nbd_other0.055
r_bond_refined_d0.006
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3229
Nucleic Acid Atoms
Solvent Atoms130
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XDSdata scaling
MOLREPphasing