X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3SMR 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP729125% PEG3350, 0.2 M (NH4)2SO4, 0.1M BTP pH 7.0
Crystal Properties
Matthews coefficientSolvent content
2.5651.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 101.382α = 90
b = 86.37β = 96.59
c = 80.796γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER2 X 16M2022-07-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-C0.97918APS24-ID-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.75095.90.1350.1490.0620.9837.75.772369
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Rrim I (All)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.71.7395.10.9821.0870.4560.6585.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.749.0670899146795.660.197220.196540.23174RANDOM17.577
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.12-0.080.37-0.47
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.128
r_dihedral_angle_4_deg18.556
r_dihedral_angle_3_deg13.002
r_dihedral_angle_1_deg8.651
r_long_range_B_refined4.157
r_long_range_B_other3.989
r_scangle_other2.29
r_mcangle_it1.701
r_mcangle_other1.7
r_scbond_it1.478
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.128
r_dihedral_angle_4_deg18.556
r_dihedral_angle_3_deg13.002
r_dihedral_angle_1_deg8.651
r_long_range_B_refined4.157
r_long_range_B_other3.989
r_scangle_other2.29
r_mcangle_it1.701
r_mcangle_other1.7
r_scbond_it1.478
r_scbond_other1.478
r_angle_refined_deg1.398
r_angle_other_deg1.306
r_mcbond_it1.096
r_mcbond_other1.094
r_chiral_restr0.066
r_bond_refined_d0.007
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4668
Nucleic Acid Atoms
Solvent Atoms436
Heterogen Atoms108

Software

Software
Software NamePurpose
REFMACrefinement
HKL-3000data scaling
PHASERphasing