☰ Navigation Tabs
SOS2 co-crystal structure with fragment bound (compound 12)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6EIE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 281.15 10% Peg 3350
Crystal Properties Matthews coefficient Solvent content 2.56 52.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.576 α = 84.84 b = 52.339 β = 75.48 c = 60.932 γ = 75.95
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2022-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 1.0332 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 43.9 97 0.99 8.43 3.6 40046
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 1.97 0.27
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6EIE 1.92 43.9 38129 1919 97.04 0.20039 0.19835 0.2052 0.24032 0.2446 RANDOM 39.152
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.98 -0.11 0.12 0.37 -1.21 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.139 r_dihedral_angle_4_deg 17.997 r_dihedral_angle_3_deg 17.608 r_long_range_B_refined 8.661 r_long_range_B_other 8.66 r_dihedral_angle_1_deg 6.4 r_scangle_other 5.876 r_mcangle_it 4.338 r_mcangle_other 4.337 r_scbond_it 3.866
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.139 r_dihedral_angle_4_deg 17.997 r_dihedral_angle_3_deg 17.608 r_long_range_B_refined 8.661 r_long_range_B_other 8.66 r_dihedral_angle_1_deg 6.4 r_scangle_other 5.876 r_mcangle_it 4.338 r_mcangle_other 4.337 r_scbond_it 3.866 r_scbond_other 3.865 r_mcbond_other 3.083 r_mcbond_it 3.082 r_angle_refined_deg 1.462 r_angle_other_deg 1.292 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3839 Nucleic Acid Atoms Solvent Atoms 202 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement autoPROC data processing XSCALE data scaling Coot model building