8S1U

YlmH bound to stalled 50S subunits with RqcH and PtRNA


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it42.999
r_lrange_other42.999
r_mcangle_it17.948
r_mcangle_other17.948
r_scangle_it13.615
r_scangle_other13.615
r_dihedral_angle_6_deg13.23
r_dihedral_angle_3_deg13.125
r_mcbond_it9.997
r_mcbond_other9.996
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_it42.999
r_lrange_other42.999
r_mcangle_it17.948
r_mcangle_other17.948
r_scangle_it13.615
r_scangle_other13.615
r_dihedral_angle_6_deg13.23
r_dihedral_angle_3_deg13.125
r_mcbond_it9.997
r_mcbond_other9.996
r_dihedral_angle_1_deg8.351
r_scbond_it7.878
r_scbond_other7.878
r_dihedral_angle_2_deg2.975
r_dihedral_angle_other_2_deg1.375
r_angle_refined_deg1.089
r_angle_other_deg0.422
r_nbtor_refined0.217
r_metal_ion_refined0.198
r_ncsr_local_group_10.195
r_symmetry_nbd_other0.166
r_nbd_refined0.147
r_xyhbond_nbd_refined0.122
r_chiral_restr_other0.085
r_symmetry_nbtor_other0.076
r_symmetry_xyhbond_nbd_other0.074
r_chiral_restr0.044
r_gen_planes_refined0.009
r_bond_refined_d0.006
r_gen_planes_other0.003
r_bond_other_d0.001
r_ext_dist_refined_b
Sample
50S ribosomal subunit with stalled P-tRNA-nascent chain, bound by YlmH
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE-PROPANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles3770
Reported Resolution (Å)3.4
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeFEI FALCON IV (4k x 4k)
Electron Dose (electrons/Å**2)40
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)400
Maximum Defocus (nm)900
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
PARTICLE SELECTIONcrYOLO1.8.3
CTF CORRECTIONRELION4.0.1
INITIAL EULER ASSIGNMENTRELION4.0.1
FINAL EULER ASSIGNMENTRELION4.0.1
RECONSTRUCTIONRELION4.0.1
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION2550984