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A fragment-based inhibitor of SHP2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.5M K formate
15% PEG 3350
0.1M pH=8 Bis-Tris propane/HCl
Crystal Properties Matthews coefficient Solvent content 2.27 45.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.572 α = 90 b = 216.554 β = 96.69 c = 56.07 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 9M 2015-08-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 .92819 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.17 108.28 99.8 0.074 7.4 3.4 57530
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.17 2.21 99.8 1.09
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.17 108.28 54747 2908 99.79 0.18289 0.18028 0.1882 0.23148 0.2363 RANDOM 54.533
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 -0.53 0.49 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.992 r_dihedral_angle_4_deg 18.771 r_dihedral_angle_3_deg 16.481 r_dihedral_angle_1_deg 15.987 r_long_range_B_refined 7.954 r_long_range_B_other 7.953 r_scbond_it 4.03 r_scbond_other 4.029 r_mcbond_it 3.188 r_mcbond_other 3.187
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.992 r_dihedral_angle_4_deg 18.771 r_dihedral_angle_3_deg 16.481 r_dihedral_angle_1_deg 15.987 r_long_range_B_refined 7.954 r_long_range_B_other 7.953 r_scbond_it 4.03 r_scbond_other 4.029 r_mcbond_it 3.188 r_mcbond_other 3.187 r_angle_refined_deg 1.287 r_angle_other_deg 0.463 r_chiral_restr 0.056 r_bond_refined_d 0.009 r_bond_other_d 0.001 r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8207 Nucleic Acid Atoms Solvent Atoms 420 Heterogen Atoms 24
Software Software Software Name Purpose XDS data reduction Aimless data scaling REFMAC refinement CSearch phasing