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A fragment-based inhibitor of SHP2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.5M K formate
15% PEG 3350
0.1M pH=8 Bis-Tris propane/HCl
Crystal Properties Matthews coefficient Solvent content 2.2 44.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.063 α = 90 b = 212.634 β = 97.16 c = 55.987 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 .97623 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 49.24 98.4 0.079 8 3.4 68408
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.07 0.78
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.02 49.28 65261 3486 98.73 0.21842 0.21556 0.2212 0.27183 0.2741 RANDOM 50.892
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.73 -0.19 -4.43 1.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.435 r_dihedral_angle_4_deg 20.802 r_dihedral_angle_3_deg 15.909 r_long_range_B_refined 6.725 r_long_range_B_other 6.708 r_dihedral_angle_1_deg 6.691 r_scbond_it 2.478 r_scbond_other 2.474 r_mcbond_it 2.046 r_mcbond_other 2.045
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.435 r_dihedral_angle_4_deg 20.802 r_dihedral_angle_3_deg 15.909 r_long_range_B_refined 6.725 r_long_range_B_other 6.708 r_dihedral_angle_1_deg 6.691 r_scbond_it 2.478 r_scbond_other 2.474 r_mcbond_it 2.046 r_mcbond_other 2.045 r_angle_refined_deg 1.265 r_angle_other_deg 0.457 r_chiral_restr 0.058 r_bond_refined_d 0.009 r_bond_other_d 0.001 r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8076 Nucleic Acid Atoms Solvent Atoms 502 Heterogen Atoms 18
Software Software Software Name Purpose XDS data reduction XDS data reduction Aimless data scaling Aimless data scaling