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ATPase family AAA domain containing 2 with crystallization epitope mutations V1022R:Q1027E
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3DAI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20% PEG6000
10% ethylene glycol
0.1M tris pH 7.5
0.1M calcium chloride
Crystal Properties Matthews coefficient Solvent content 2.37 48.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.4 α = 90 b = 47.76 β = 90 c = 80.29 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.91739 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.36 41.05 98.6 0.999 19.1 6.4 31956
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.36 1.4 0.519
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.36 41.047 31908 1573 98.251 0.211 0.2109 0.2109 0.2214 0.2215 29.255
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.625 -0.565 -1.061
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.971 r_dihedral_angle_3_deg 11.241 r_lrange_it 5.739 r_dihedral_angle_1_deg 4.757 r_scangle_it 3.979 r_scbond_it 2.399 r_mcangle_it 2.26 r_angle_refined_deg 1.546 r_mcbond_it 1.388 r_dihedral_angle_2_deg 1.141
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.971 r_dihedral_angle_3_deg 11.241 r_lrange_it 5.739 r_dihedral_angle_1_deg 4.757 r_scangle_it 3.979 r_scbond_it 2.399 r_mcangle_it 2.26 r_angle_refined_deg 1.546 r_mcbond_it 1.388 r_dihedral_angle_2_deg 1.141 r_nbtor_refined 0.321 r_xyhbond_nbd_refined 0.281 r_symmetry_xyhbond_nbd_refined 0.255 r_nbd_refined 0.215 r_symmetry_nbd_refined 0.169 r_chiral_restr 0.084 r_bond_refined_d 0.01 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1043 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling REFMAC phasing