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Chromatin remodeling regulator CECR2 with in crystallo disulfide bond
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3NXB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 3M sodium chloride
0.1M Bis-Tris pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.41 49.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.91 α = 90 b = 77.2 β = 91.22 c = 78.14 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9794 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 46.93 99.5 0.999 18.2 3.4 61333
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.7 0.768
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.66 46.93 61333 2939 99.45 0.185 0.1832 0.1832 0.2103 0.2108 38.695
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.74 0.127 2.546 0.188
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.922 r_dihedral_angle_3_deg 11.704 r_lrange_other 7.219 r_lrange_it 7.212 r_scangle_it 6.985 r_scangle_other 6.984 r_scbond_other 5.282 r_scbond_it 5.278 r_dihedral_angle_1_deg 4.793 r_mcangle_other 4.277
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.922 r_dihedral_angle_3_deg 11.704 r_lrange_other 7.219 r_lrange_it 7.212 r_scangle_it 6.985 r_scangle_other 6.984 r_scbond_other 5.282 r_scbond_it 5.278 r_dihedral_angle_1_deg 4.793 r_mcangle_other 4.277 r_mcangle_it 4.274 r_mcbond_other 3.479 r_mcbond_it 3.471 r_angle_other_deg 1.911 r_angle_refined_deg 1.342 r_dihedral_angle_2_deg 0.61 r_symmetry_xyhbond_nbd_refined 0.417 r_symmetry_nbd_refined 0.307 r_xyhbond_nbd_refined 0.225 r_nbd_refined 0.216 r_nbtor_refined 0.197 r_symmetry_nbd_other 0.194 r_nbd_other 0.19 r_symmetry_nbtor_other 0.101 r_metal_ion_refined 0.061 r_chiral_restr 0.058 r_dihedral_angle_other_3_deg 0.026 r_bond_other_d 0.025 r_symmetry_metal_ion_refined 0.023 r_symmetry_xyhbond_nbd_other 0.022 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3305 Nucleic Acid Atoms Solvent Atoms 364 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling REFMAC phasing