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Af Aio C65F-C80G bound to Sb oxyanion
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CFF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 273 PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.56 51.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.254 α = 82.33 b = 109.123 β = 89.68 c = 116.997 γ = 83.69
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 1M 2017-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.9737 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.87 116.06 96.9 0.97 6.1 3.4 359979
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 5.05 0.504
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.87 48.94 334540 17518 96.84 0.18083 0.17909 0.1906 0.21385 0.2227 RANDOM 21.054
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 0.5 -0.09 1.67 0.54 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.815 r_dihedral_angle_2_deg 9.914 r_dihedral_angle_1_deg 7.439 r_long_range_B_refined 5.9 r_long_range_B_other 5.897 r_scangle_other 4.98 r_scbond_it 3.659 r_scbond_other 3.659 r_mcangle_it 3.057 r_mcangle_other 3.057
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 12.815 r_dihedral_angle_2_deg 9.914 r_dihedral_angle_1_deg 7.439 r_long_range_B_refined 5.9 r_long_range_B_other 5.897 r_scangle_other 4.98 r_scbond_it 3.659 r_scbond_other 3.659 r_mcangle_it 3.057 r_mcangle_other 3.057 r_mcbond_it 2.408 r_mcbond_other 2.408 r_angle_refined_deg 2.111 r_angle_other_deg 0.703 r_chiral_restr 0.108 r_bond_refined_d 0.015 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 29932 Nucleic Acid Atoms Solvent Atoms 2272 Heterogen Atoms 847
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling REFMAC phasing