☰ Navigation Tabs
Flavin-dependent tryptophan 6-halogenase Thal in complex with tryptoline
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6H44
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293.15 reservoir: 0.1 M bicine pH 8.0, 1.6 M KH2PO4/K2HPO4; protein: 15 mg/mL Thal-wt (10 mM Tris pH 7.4, 50 mM NaCl, 1 mM DTT); Ratio: 100 nL protein + 100 nL reservoir
Crystal Properties Matthews coefficient Solvent content 3.29 62.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 137.59 α = 90 b = 137.59 β = 90 c = 144.05 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2020-03-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 100 0.157 0.998 15.35 10.46 78305 42.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 100 2.56 0.353 0.99 9.48
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R-VALUE 2.2 45.04 1.34 78242 3913 99.91 0.1705 0.1688 0.1689 0.2037 0.2035 53.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.5627 f_angle_d 1.136 f_chiral_restr 0.0738 f_plane_restr 0.0119 f_bond_d 0.0081
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8331 Nucleic Acid Atoms Solvent Atoms 558 Heterogen Atoms 121
Software Software Software Name Purpose PHENIX refinement XDS data reduction XSCALE data scaling Coot model building PHENIX phasing