Experiment: 8RPM

X-RAY DIFFRACTION

Serial Crystallography (SX)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	8B3L

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	MICROFLUIDIC	3.5	295	Just in-time crystallization (JINXED): a lysozyme solution in acetate buffer (pH 3.5) was mixed with crystallization solution on a running conveyor belt using 3D printed micro nozzles. Crystallization solution: N,N',N'',N''',N'''',N'''''-Hexaacetyl chitohexaose in 33 mM acetate buffer, pH3.5, 6.67% (w/v) PEG4000, 2.07 M NaCl, 6.67% DMSO

Crystal Properties
Matthews coefficient	Solvent content
2.08	40.84

Symmetry
Space Group	P 43 21 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	295	PIXEL	DECTRIS EIGER X 16M		2023-06-04	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PETRA III, DESY BEAMLINE P11	1.033	PETRA III, DESY	P11

Sample delivery method
Diffraction ID	Description	Sample Delivery Method
1	JINXED on TapeDrive	injection

Data Reduction
Diffraction ID	Frames Indexed	Crystal Hits	Frames Indexed	Latices Merged
1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	R Split (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	79.365	100	0.98	0.117	5.292	373.9		11716

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	R Split (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.864	100		0.446	1.115	0.94	248.5

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.8	56	10264	637	93.31	0.18695	0.18466	0.1928	0.22215	0.2386	RANDOM	34.619

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.26			-0.26		0.51

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	11.44
r_long_range_B_other	9.602
r_long_range_B_refined	9.599
r_scangle_other	8.456
r_dihedral_angle_1_deg	7.007
r_scbond_it	5.882
r_scbond_other	5.874
r_dihedral_angle_2_deg	4.72
r_mcangle_other	4.64
r_mcangle_it	4.594

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	11.44
r_long_range_B_other	9.602
r_long_range_B_refined	9.599
r_scangle_other	8.456
r_dihedral_angle_1_deg	7.007
r_scbond_it	5.882
r_scbond_other	5.874
r_dihedral_angle_2_deg	4.72
r_mcangle_other	4.64
r_mcangle_it	4.594
r_mcbond_it	3.779
r_mcbond_other	3.756
r_angle_refined_deg	1.433
r_angle_other_deg	0.491
r_chiral_restr	0.072
r_gen_planes_refined	0.006
r_bond_refined_d	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1001
Nucleic Acid Atoms
Solvent Atoms	71
Heterogen Atoms	3

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8RPM | pdb_00008rpm