☰ Navigation Tabs
Unspecific peroxygenase from Marasmius wettsteinii (MweUPO-1) in complex with tetradecane
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5FUK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 12% PEG 4000, 200mM ammonium sulfate.
Soaking: 25mM tetradecane, 16 hours, cryoprotected with 15% glycerol
Crystal Properties Matthews coefficient Solvent content 2.54 51.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.122 α = 90 b = 76.122 β = 90 c = 186.552 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M KB MIRRORS 2021-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.9793 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.72 48.16 98.4 0.042 0.046 0.019 0.999 21 6 57947
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.72 1.75 0.518 0.564 0.221 0.942 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.72 46.66 55027 2898 97.88 0.18099 0.1799 0.1908 0.20136 0.2106 RANDOM 30.639
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.93 0.93 -1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.098 r_dihedral_angle_1_deg 6.515 r_dihedral_angle_2_deg 6.216 r_long_range_B_refined 5.184 r_long_range_B_other 5.183 r_scangle_other 4.007 r_mcangle_it 2.831 r_mcangle_other 2.831 r_scbond_it 2.584 r_scbond_other 2.583
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.098 r_dihedral_angle_1_deg 6.515 r_dihedral_angle_2_deg 6.216 r_long_range_B_refined 5.184 r_long_range_B_other 5.183 r_scangle_other 4.007 r_mcangle_it 2.831 r_mcangle_other 2.831 r_scbond_it 2.584 r_scbond_other 2.583 r_mcbond_it 1.942 r_mcbond_other 1.942 r_angle_refined_deg 1.341 r_angle_other_deg 0.538 r_chiral_restr 0.067 r_gen_planes_other 0.011 r_gen_planes_refined 0.008 r_bond_refined_d 0.006 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3642 Nucleic Acid Atoms Solvent Atoms 465 Heterogen Atoms 252
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing