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RECQL5:sfGFP hetero dimer assembled by Di-Gluebody - sfGFP local refinement
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3K1K experimental model PDB 7ZMV
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 3.702 f_angle_d 0.451 f_chiral_restr 0.044 f_plane_restr 0.003 f_bond_d 0.002
Sample Local refinement of the sfGFP part of the RECQL5:sfGFP heterodimer assembled by the Di-Gluebody Sample Components Green fluorescent protein Di-Gluebody
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 359811 Reported Resolution (Å) 2.99 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (3K1K, 7ZMV) Refinement Space REAL Refinement Protocol Refinement Target Overall B Value 103.6 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 42
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1500 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.0 IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC 4.0 MODEL FITTING UCSF ChimeraX MODEL REFINEMENT PHENIX MODEL REFINEMENT Coot INITIAL EULER ASSIGNMENT cryoSPARC 4.0 FINAL EULER ASSIGNMENT cryoSPARC 4.0 CLASSIFICATION cryoSPARC 4.0 RECONSTRUCTION cryoSPARC 4.0
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 1434365