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SPNS2 in complex with homo Di-Gluebody GbD12
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8QV6
Sample SPNS2 in complex with homo Di-Gluebody GbD12 Sample Components Di-Gluebody GbD12 Sphingosine-1-phosphate transporter SPNS2
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 440552 Reported Resolution (Å) 3.76 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C2
Map-Model Fitting and Refinement Id 1 (8QV6) Refinement Space REAL Refinement Protocol Refinement Target Overall B Value 148.8 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 50
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1500 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.0 IMAGE ACQUISITION EPU CTF CORRECTION cryoSPARC 4.0 MODEL FITTING UCSF ChimeraX INITIAL EULER ASSIGNMENT cryoSPARC 4.0 FINAL EULER ASSIGNMENT cryoSPARC 4.0 RECONSTRUCTION cryoSPARC 4.0 MODEL REFINEMENT PHENIX MODEL REFINEMENT Coot
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION Patch-CTF in cryoSPARC 871094