8RHS

Structure of the ZnF domain from human Roquin-1


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
11D0.36 mM [U-15N] Human Roquin-1 zinc finger domain, 25 mM TRIS, 150 mM sodium chloride, 2 mM TCEP, 0.02 mg/mL Zinc90% H2O/10% D2O0.15 M7.01 atm298Bruker AVANCE III 800
22D 1H-15N HSQC0.36 mM [U-15N] Human Roquin-1 zinc finger domain, 25 mM TRIS, 150 mM sodium chloride, 2 mM TCEP, 0.02 mg/mL Zinc90% H2O/10% D2O0.15 M7.01 atm298Bruker AVANCE 500
32D 1H-13C HSQC aliphatic0.74 mM [U-100% 13C; U-100% 15N] Human Roquin-1 zinc finger domain, 25 mM TRIS, 150 mM sodium chloride, 2 mM TCEP, 0.02 mM Zinc90% H2O/10% D2O0.15 M7.01 atm298Bruker AVANCE III 800
42D 1H-13C HSQC aromatic0.74 mM [U-100% 13C; U-100% 15N] Human Roquin-1 zinc finger domain, 25 mM TRIS, 150 mM sodium chloride, 2 mM TCEP, 0.02 mM Zinc90% H2O/10% D2O0.15 M7.01 atm298Bruker AVANCE III 800
53D 1H-15N NOESY0.36 mM [U-15N] Human Roquin-1 zinc finger domain, 25 mM TRIS, 150 mM sodium chloride, 2 mM TCEP, 0.02 mg/mL Zinc90% H2O/10% D2O0.15 M7.01 atm298Bruker AVANCE 600
93D 1H-13C NOESY aromatic0.74 mM [U-100% 13C; U-100% 15N] Human Roquin-1 zinc finger domain, 25 mM TRIS, 150 mM sodium chloride, 2 mM TCEP, 0.02 mM Zinc90% H2O/10% D2O0.15 M7.01 atm298Bruker AVANCE III 800
83D 1H-13C NOESY aliphatic0.74 mM [U-100% 13C; U-100% 15N] Human Roquin-1 zinc finger domain, 25 mM TRIS, 150 mM sodium chloride, 2 mM TCEP, 0.02 mM Zinc90% H2O/10% D2O0.15 M7.01 atm298Bruker AVANCE III 800
73D HNCACB0.74 mM [U-100% 13C; U-100% 15N] Human Roquin-1 zinc finger domain, 25 mM TRIS, 150 mM sodium chloride, 2 mM TCEP, 0.02 mM Zinc90% H2O/10% D2O0.15 M7.01 atm298Bruker AVANCE 500
63D HBHANH0.74 mM [U-100% 13C; U-100% 15N] Human Roquin-1 zinc finger domain, 25 mM TRIS, 150 mM sodium chloride, 2 mM TCEP, 0.02 mM Zinc90% H2O/10% D2O0.15 M7.01 atm298Bruker AVANCE 500
113D HN(CA)CO0.74 mM [U-100% 13C; U-100% 15N] Human Roquin-1 zinc finger domain, 25 mM TRIS, 150 mM sodium chloride, 2 mM TCEP, 0.02 mM Zinc90% H2O/10% D2O0.15 M7.01 atm298Bruker AVANCE 500
103D HNCO0.74 mM [U-100% 13C; U-100% 15N] Human Roquin-1 zinc finger domain, 25 mM TRIS, 150 mM sodium chloride, 2 mM TCEP, 0.02 mM Zinc90% H2O/10% D2O0.15 M7.01 atm298Bruker AVANCE 500
123D CCH TOCSY0.74 mM [U-100% 13C; U-100% 15N] Human Roquin-1 zinc finger domain, 25 mM TRIS, 150 mM sodium chloride, 2 mM TCEP, 0.02 mM Zinc90% H2O/10% D2O0.15 M7.01 atm298Bruker AVANCE III 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE500
2BrukerAVANCE600
3BrukerAVANCE III800
NMR Refinement
MethodDetailsSoftware
simulated annealingCYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number100
Conformers Submitted Total Number20
Representative Model1 (medoid)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionTopSpin3.xBruker Biospin
5processingTopSpin3.xBruker Biospin
2chemical shift assignmentCcpNmr Analysis2.1CCPN
3peak pickingCcpNmr Analysis2.1CCPN
4structure calculationCYANA3Guntert, Mumenthaler and Wuthrich
6refinementCYANA3Guntert, Mumenthaler and Wuthrich