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CryoEM structure of mTORC1 with a paediatric kidney cancer-associated 1455-EWED-1458 duplication in mTOR, overall refinement
ELECTRON MICROSCOPY
Refinement
RMS Deviations
Key
Refinement Restraint Deviation
f_dihedral_angle_d
6.2443
f_angle_d
0.7169
f_chiral_restr
0.0439
f_plane_restr
0.0066
f_bond_d
0.004
Sample
mTORC1 complex is a dimer of a heterotrimeric complex including mTOR, RAPTOR and mLST8
Specimen Preparation
Sample Aggregation State
PARTICLE
Vitrification Instrument
FEI VITROBOT MARK IV
Cryogen Name
ETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction Method
SINGLE PARTICLE
Number of Particles
264890
Reported Resolution (Å)
4
Resolution Method
FSC 0.143 CUT-OFF
Other Details
RELION was used for final reconstructions.
Refinement Type
Symmetry Type
POINT
Point Symmetry
C1
Map-Model Fitting and Refinement
Id
1
Refinement Space
REAL
Refinement Protocol
FLEXIBLE FIT
Refinement Target
cross-correlation coefficient
Overall B Value
122.3
Fitting Procedure
Details
Initial local fitting was done in Coot and Chimera and then subjected to ROSETTA for model rebuilding. Finally, in Phenix real-space refine was perfor ...
Initial local fitting was done in Coot and Chimera and then subjected to ROSETTA for model rebuilding. Finally, in Phenix real-space refine was performed for the final model