8R8P

Solution structure of SMN-CX bound to the RNA helix formed upon SMN2 exon7 5'-splice site recognition


SOLID-STATE NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D 1H-13C HSQC aliphatic10 mM MES, 50 mM sodium chloride, 1 mM RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), 1 mM RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3'), 1.5 mM SCX100% D2O50 mM5.5atm atm293Bruker AVANCE III HD 800
22D 1H-13C HSQC aromatic10 mM MES, 50 mM sodium chloride, 1 mM RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), 1 mM RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3'), 1.5 mM SCX100% D2O50 mM5.5atm atm293Bruker AVANCE III HD 800
32D 1H-1H NOESY10 mM MES, 50 mM sodium chloride, 1 mM RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), 1 mM RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3'), 1.5 mM SCX100% D2O50 mM5.5atm atm293Bruker AVANCE III HD 800
42D 1H-1H TOCSY10 mM MES, 50 mM sodium chloride, 1 mM RNA (5'-R(*AP*UP*AP*CP*(PSU)P*(PSU)P*AP*CP*CP*UP*G)-3'), 1 mM RNA (5'-R(P*GP*GP*AP*GP*UP*AP*AP*GP*UP*CP*U)-3'), 1.5 mM SCX100% D2O50 mM5.5atm atm293Bruker AVANCE III HD 800
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE III HD800
NMR Refinement
MethodDetailsSoftware
simulated annealingAmber
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations
Conformers Calculated Total Number50
Conformers Submitted Total Number15
Representative Model1 (fewest violations)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1refinementAmberCase, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
2structure calculationCYANA3.98Guntert, Mumenthaler and Wuthrich
3chemical shift assignmentCARAKeller and Wuthrich
4peak pickingCARAKeller and Wuthrich