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NT-26 Arsenite oxidase B F108C-G123C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8CCQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 2M ammonium sulphate, 0.1 M Hepes pH 7.5 and 2% (v/v) polyethylene glycol (PEG) 400
Crystal Properties Matthews coefficient Solvent content 2.74 55.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.607 α = 90 b = 148.928 β = 90 c = 231.901 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-06-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000020 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 49.32 99.4 0.998 13.98 2 384388
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 2.01 0.636
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.894 49.32 300000 16000 99.431 0.154 0.1523 0.1523 0.1854 0.1854 28.817
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.007 0.002 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.425 r_dihedral_angle_2_deg 12.967 r_dihedral_angle_3_deg 12.512 r_lrange_it 7.305 r_lrange_other 7.258 r_dihedral_angle_1_deg 6.968 r_scangle_it 6.785 r_scangle_other 6.785 r_scbond_it 4.941 r_scbond_other 4.941
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.425 r_dihedral_angle_2_deg 12.967 r_dihedral_angle_3_deg 12.512 r_lrange_it 7.305 r_lrange_other 7.258 r_dihedral_angle_1_deg 6.968 r_scangle_it 6.785 r_scangle_other 6.785 r_scbond_it 4.941 r_scbond_other 4.941 r_mcangle_other 3.74 r_mcangle_it 3.739 r_mcbond_it 3.144 r_mcbond_other 3.144 r_angle_refined_deg 2.046 r_dihedral_angle_other_2_deg 1.163 r_angle_other_deg 0.698 r_symmetry_nbd_refined 0.231 r_nbd_refined 0.214 r_symmetry_nbd_other 0.197 r_nbd_other 0.186 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.156 r_symmetry_xyhbond_nbd_refined 0.13 r_chiral_restr 0.114 r_metal_ion_refined 0.099 r_symmetry_nbtor_other 0.084 r_ncsr_local_group_1 0.066 r_ncsr_local_group_2 0.064 r_ncsr_local_group_3 0.064 r_ncsr_local_group_8 0.058 r_ncsr_local_group_11 0.057 r_ncsr_local_group_7 0.055 r_ncsr_local_group_12 0.049 r_ncsr_local_group_5 0.048 r_symmetry_xyhbond_nbd_other 0.047 r_ncsr_local_group_9 0.047 r_ncsr_local_group_6 0.033 r_ncsr_local_group_4 0.032 r_ncsr_local_group_10 0.031 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 30162 Nucleic Acid Atoms Solvent Atoms 2569 Heterogen Atoms 767
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing