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Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 G678S mutant with bound malate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8OJY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 293 0.1M Hepes pH7.5; 0.2M MgCl2; 30% PEG400
Crystal Properties Matthews coefficient Solvent content 4.37 71.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 242.871 α = 90 b = 242.871 β = 90 c = 396.113 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2019-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.980114 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.092 49.5604 93.2509 0.28 0.999 8.16 25.4 100172 78.5231297533
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.092 3.209 3.357 0.6347
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.0920328441 49.5603860786 1.34759131961 99985 1998 93.076837147 0.20362961591 0.202636654183 0.2038 0.252531051454 0.2534 78.0567969531
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.5277060291 f_angle_d 1.06761376927 f_chiral_restr 0.0547145741308 f_bond_d 0.0100249533386 f_plane_restr 0.00727286275428
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 22253 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 100
Software Software Software Name Purpose MxCuBE data collection PHENIX refinement XDS data reduction STARANISO data scaling PHASER phasing