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Inactivated tick-borne encephalitis virus (TBEV) vaccine strain Sofjin-Chumakov
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5O6A
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.1831 f_angle_d 0.7227 f_chiral_restr 0.0455 f_plane_restr 0.0084 f_bond_d 0.0026
Sample Tick-borne encephalitis virus (STRAIN Sofjin-Chumakov)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 70491 Reported Resolution (Å) 3.6 Resolution Method FSC 0.143 CUT-OFF Other Details The local non-uniform refinement was used on the set of particles subjected to I symmetry expansion Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 (5O6A) Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 68
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION cryoSPARC 4.0 MODEL FITTING UCSF Chimera MODEL REFINEMENT Coot MODEL REFINEMENT ISOLDE MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION