☰ Navigation Tabs
Human Angiotensin-1 converting enzyme N-domain in complex with the lactotripeptide IPP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6F9V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 289.15 30% PEG 500 MME/PEG 20000, 0.1 M Tris/Bicine pH 8.5 and 60 mM divalent cations [Molecular Dimensions (Rotherham, UK) Morpheus A9]
Crystal Properties Matthews coefficient Solvent content 3.06 59.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.229 α = 84.95 b = 103.395 β = 85.493 c = 115.416 γ = 81.549
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9282 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 114.71 97.2 0.061 0.998 6.4 6.9 432760
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 0.859 0.344
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.6 79.452 432735 21616 97.142 0.182 0.1808 0.1791 0.2109 0.2102 24.203
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.631 -0.106 -0.207 0.338 -0.067 0.206
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.383 r_dihedral_angle_3_deg 14.876 r_dihedral_angle_2_deg 8.217 r_lrange_it 6.406 r_dihedral_angle_1_deg 6.217 r_scangle_it 4.292 r_scbond_it 2.934 r_mcangle_it 2.137 r_angle_refined_deg 1.939 r_mcbond_it 1.453
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.383 r_dihedral_angle_3_deg 14.876 r_dihedral_angle_2_deg 8.217 r_lrange_it 6.406 r_dihedral_angle_1_deg 6.217 r_scangle_it 4.292 r_scbond_it 2.934 r_mcangle_it 2.137 r_angle_refined_deg 1.939 r_mcbond_it 1.453 r_nbtor_refined 0.309 r_symmetry_nbd_refined 0.268 r_nbd_refined 0.235 r_xyhbond_nbd_refined 0.209 r_symmetry_xyhbond_nbd_refined 0.171 r_chiral_restr 0.134 r_metal_ion_refined 0.089 r_bond_refined_d 0.015 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19974 Nucleic Acid Atoms Solvent Atoms 2329 Heterogen Atoms 800
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing