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Crystal structure of the G11 protein heterotrimer bound to FR900359 inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3AH8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 277 0.09 M Na Acetate pH 4.5, 2.7 % PEG Smears Medium, 6.3 % MPD, 0.5% n-octyl-beta-D-Glucoside and 10 mM Zinc sulfate heptahydrate
Crystal Properties Matthews coefficient Solvent content 2.52 51.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.644 α = 90 b = 95.813 β = 90 c = 126.801 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2022-01-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.43 126.8 100 1 16.5 44 163494
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.43 1.45 99.9 0.309 0.7 46.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.43 63.113 163375 7962 99.98 0.142 0.1399 0.137 0.1804 0.1801 RANDOM 23.784
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.511 -3.419 0.908
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.476 r_dihedral_angle_3_deg 13.088 r_dihedral_angle_2_deg 12.09 r_dihedral_angle_1_deg 6.422 r_lrange_it 4.741 r_lrange_other 4.741 r_scangle_it 4.318 r_scangle_other 4.317 r_rigid_bond_restr 3.488 r_mcangle_it 3.418
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.476 r_dihedral_angle_3_deg 13.088 r_dihedral_angle_2_deg 12.09 r_dihedral_angle_1_deg 6.422 r_lrange_it 4.741 r_lrange_other 4.741 r_scangle_it 4.318 r_scangle_other 4.317 r_rigid_bond_restr 3.488 r_mcangle_it 3.418 r_mcangle_other 3.418 r_scbond_it 3.417 r_scbond_other 3.416 r_mcbond_other 2.609 r_mcbond_it 2.608 r_angle_refined_deg 1.422 r_angle_other_deg 0.518 r_dihedral_angle_other_2_deg 0.387 r_nbd_refined 0.301 r_symmetry_nbd_refined 0.268 r_symmetry_nbd_other 0.2 r_nbd_other 0.194 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.16 r_metal_ion_refined 0.147 r_symmetry_xyhbond_nbd_refined 0.116 r_chiral_restr_other 0.09 r_symmetry_nbtor_other 0.079 r_chiral_restr 0.071 r_symmetry_metal_ion_refined 0.071 r_symmetry_xyhbond_nbd_other 0.01 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5755 Nucleic Acid Atoms Solvent Atoms 760 Heterogen Atoms 113
Software Software Software Name Purpose REFMAC refinement XDS data reduction autoPROC data scaling PHASER phasing