8Q7J
Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H NOESY | 23 mM CYCLOSPORIN A | CDCl3/n-hexadecane-D34 | 0 M | 7 | 1 bar | 274 | Bruker AVANCE NEO 700 |
2 | 2D 1H-1H TOCSY | 23 mM CYCLOSPORIN A | CDCl3/n-hexadecane-D34 | 0 M | 7 | 1 bar | 274 | Bruker AVANCE NEO 700 |
3 | 2D 1H-13C HSQC | 23 mM CYCLOSPORIN A | CDCl3/n-hexadecane-D34 | 0 M | 7 | 1 bar | 274 | Bruker AVANCE NEO 700 |
4 | 2D 1H-13C HMBC | 23 mM CYCLOSPORIN A | CDCl3/n-hexadecane-D34 | 0 M | 7 | 1 bar | 274 | Bruker AVANCE NEO 700 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE NEO | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | Amber |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | chemical shift assignment | CcpNmr Analysis | 2.5 | CCPN |
2 | structure calculation | CYANA | 3.98.15 | Guntert, Mumenthaler and Wuthrich |
3 | refinement | Amber | 22 | Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman |
4 | peak picking | NMRPipe | 10.9 | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax |