8Q4E

Structure of Legionella pneumophila Lcl C-terminal domain

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	6.5	293	2.0 M (NH4)2SO4, 0.1 M bis-tris

Crystal Properties
Matthews coefficient	Solvent content
1.96	37.2

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 91.6	α = 90
b = 52.87	β = 112.09
c = 97.27	γ = 90

Symmetry
Space Group	C 1 2 1

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2015-01-26	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03	0.97969	Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.9	45.56	99.5	0.058	16.7	3.3		34006			17

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.9	1.95	97.3		0.148	6.7	2.8

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	SAD	FREE R-VALUE	1.9	45.56	34006	1659	99.328	0.16	0.1582	0.1878	17.818

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.423		-0.141	-0.434		0.731

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.54
r_dihedral_angle_3_deg	11.851
r_dihedral_angle_1_deg	6.73
r_lrange_it	6.238
r_lrange_other	6.181
r_dihedral_angle_2_deg	4.87
r_scangle_it	4.318
r_scangle_other	4.317
r_scbond_it	2.826
r_scbond_other	2.825
r_mcangle_it	1.669
r_mcangle_other	1.669
r_mcbond_it	1.219
r_mcbond_other	1.219
r_angle_refined_deg	1.18
r_angle_other_deg	0.651
r_symmetry_xyhbond_nbd_refined	0.237
r_symmetry_nbd_other	0.202
r_nbd_refined	0.2
r_nbtor_refined	0.181
r_nbd_other	0.156
r_xyhbond_nbd_refined	0.154
r_symmetry_nbd_refined	0.108
r_symmetry_nbtor_other	0.08
r_chiral_restr	0.057
r_ncsr_local_group_1	0.057
r_ncsr_local_group_2	0.055
r_ncsr_local_group_3	0.043
r_gen_planes_other	0.007
r_gen_planes_refined	0.006
r_bond_refined_d	0.005
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3087
Nucleic Acid Atoms
Solvent Atoms	397
Heterogen Atoms

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
Aimless	data scaling
SHARP	phasing