Experiment: 8PUR

X-RAY DIFFRACTION

Serial Crystallography (SX)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1IBE

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	7.5	293.15	26%v PEG3350, 10mM HEPES pH 7.5

Crystal Properties
Matthews coefficient	Solvent content
2.8	56.08

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293.15	PIXEL	DECTRIS EIGER X 16M		2021-03-07	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	MAX IV BEAMLINE BioMAX	0.9762	MAX IV	BioMAX

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.85	53.504	100	0.9914	12.48	205		29515

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.85	1.916			0.9049	2.9

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.85	53.504	29515	1474	100	0.132	0.1299	0.13	0.1622	0.1622	70.77

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.493		1.674	-1.483		-0.228

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.925
r_dihedral_angle_3_deg	14.561
r_dihedral_angle_2_deg	12.972
r_lrange_other	12.391
r_lrange_it	12.388
r_scangle_other	11.722
r_scangle_it	11.719
r_scbond_it	8.357
r_scbond_other	8.348
r_mcangle_it	6.576

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	16.925
r_dihedral_angle_3_deg	14.561
r_dihedral_angle_2_deg	12.972
r_lrange_other	12.391
r_lrange_it	12.388
r_scangle_other	11.722
r_scangle_it	11.719
r_scbond_it	8.357
r_scbond_other	8.348
r_mcangle_it	6.576
r_mcangle_other	6.575
r_dihedral_angle_1_deg	5.491
r_mcbond_it	5.376
r_mcbond_other	5.365
r_angle_refined_deg	2.03
r_angle_other_deg	0.905
r_nbd_refined	0.205
r_symmetry_xyhbond_nbd_refined	0.172
r_nbtor_refined	0.16
r_xyhbond_nbd_refined	0.139
r_symmetry_nbd_other	0.129
r_chiral_restr	0.113
r_symmetry_nbd_refined	0.11
r_nbd_other	0.066
r_symmetry_nbtor_other	0.062
r_bond_refined_d	0.014
r_gen_planes_refined	0.013
r_gen_planes_other	0.007
r_bond_other_d	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2190
Nucleic Acid Atoms
Solvent Atoms	70
Heterogen Atoms	86

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8PUR | pdb_00008pur