Experiment: 8PUQ

X-RAY DIFFRACTION

Serial Crystallography (SX)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6SVA

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	BATCH MODE	7.5	293.15	26%v PEG3350, 10mM HEPES pH 7.5

Crystal Properties
Matthews coefficient	Solvent content
2.82	56.34

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	293.15	PIXEL	DECTRIS EIGER X 16M		2021-05-30	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	MAX IV BEAMLINE BioMAX	0.9762	MAX IV	BioMAX

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	R Split (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.95	53.55	100	0.9903	0.075	10.6	176		25258

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	R Split (All)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.95	2.02			0.7593	0.4194	1.37

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.95	53.55	25258	1211	100	0.127	0.1252	0.1254	0.1741	0.174	63.641

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.398		1.89	-2.054		0.157

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.422
r_dihedral_angle_3_deg	15.414
r_dihedral_angle_2_deg	12.253
r_lrange_other	10.449
r_lrange_it	10.448
r_scangle_other	9.661
r_scangle_it	9.654
r_scbond_it	6.95
r_scbond_other	6.93
r_dihedral_angle_1_deg	5.878

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.422
r_dihedral_angle_3_deg	15.414
r_dihedral_angle_2_deg	12.253
r_lrange_other	10.449
r_lrange_it	10.448
r_scangle_other	9.661
r_scangle_it	9.654
r_scbond_it	6.95
r_scbond_other	6.93
r_dihedral_angle_1_deg	5.878
r_mcangle_it	5.156
r_mcangle_other	5.154
r_mcbond_it	4.373
r_mcbond_other	4.356
r_angle_refined_deg	2.037
r_angle_other_deg	0.843
r_nbd_refined	0.208
r_nbtor_refined	0.168
r_xyhbond_nbd_refined	0.153
r_symmetry_nbd_other	0.142
r_symmetry_xyhbond_nbd_refined	0.114
r_symmetry_nbd_refined	0.112
r_chiral_restr	0.106
r_nbd_other	0.104
r_symmetry_nbtor_other	0.068
r_bond_refined_d	0.015
r_gen_planes_refined	0.013
r_gen_planes_other	0.007
r_bond_other_d	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2180
Nucleic Acid Atoms
Solvent Atoms	93
Heterogen Atoms	86

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8PUQ | pdb_00008puq