8PR7

Aurora-A in complex with CEP192 and an inhibitory monobody


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6CPG 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2910.06M Divalents, Buffer system 1 pH 6.5, 40% Ethylene glycol, 20% PEG 8000
Crystal Properties
Matthews coefficientSolvent content
3.3863.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 112.58α = 90
b = 112.58β = 90
c = 216.31γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS EIGER X 16M2022-11-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I040.9537DiamondI04

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.7664.112100119.725.936627
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.762.810.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE2.7664.11236552190499.9810.2050.20230.256492.224
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.4381.438-2.875
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_other19.925
r_lrange_it19.922
r_dihedral_angle_3_deg17.122
r_scangle_it16.616
r_scangle_other16.614
r_dihedral_angle_6_deg16.215
r_mcangle_it14.312
r_mcangle_other14.31
r_scbond_it11.955
r_scbond_other11.953
RMS Deviations
KeyRefinement Restraint Deviation
r_lrange_other19.925
r_lrange_it19.922
r_dihedral_angle_3_deg17.122
r_scangle_it16.616
r_scangle_other16.614
r_dihedral_angle_6_deg16.215
r_mcangle_it14.312
r_mcangle_other14.31
r_scbond_it11.955
r_scbond_other11.953
r_mcbond_it10.525
r_mcbond_other10.516
r_dihedral_angle_1_deg7.322
r_dihedral_angle_2_deg6.636
r_angle_refined_deg1.451
r_angle_other_deg0.497
r_symmetry_xyhbond_nbd_refined0.246
r_nbd_refined0.236
r_dihedral_angle_other_2_deg0.215
r_symmetry_nbd_other0.202
r_nbtor_refined0.193
r_nbd_other0.177
r_xyhbond_nbd_refined0.144
r_symmetry_nbtor_other0.084
r_symmetry_nbd_refined0.077
r_chiral_restr0.065
r_chiral_restr_other0.044
r_symmetry_xyhbond_nbd_other0.025
r_bond_refined_d0.006
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5772
Nucleic Acid Atoms
Solvent Atoms87
Heterogen Atoms61

Software

Software
Software NamePurpose
REFMACrefinement
xia2data reduction
xia2data scaling
PHASERphasing