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p97 (VCP) mutant - F539A state III
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8AJF
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 6.413 f_angle_d 0.566 f_chiral_restr 0.041 f_plane_restr 0.004 f_bond_d 0.003
Sample Tertiary complex of the hexameric p97 F539A mutant (state III)
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details pre-blotting incubation time of 20 seconds and blot for 2.0 seconds with -1 blot force
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 163728 Reported Resolution (Å) 3.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (8AJF) Refinement Space Refinement Protocol Refinement Target Overall B Value 102 Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 42
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 1800 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL REFINEMENT PHENIX 1.20.1_4487:
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 5686568