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human RYBP-PRC1 bound to H2AK118ub1 nucleosome
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 29.503 f_angle_d 0.559 f_chiral_restr 0.035 f_bond_d 0.005 f_plane_restr 0.004
Sample human RYBP-PRC1 bound to H2AK118ub1 nucleosome Sample Components human RYBP Drosophila octamer DNA Human Ubiquitin
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 12150042 Reported Resolution (Å) 3.18 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K3 (6k x 4k) Electron Dose (electrons/Å**2) 54
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 500 Maximum Defocus (nm) 3000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL REFINEMENT PHENIX INITIAL EULER ASSIGNMENT RELION 3.1.1 FINAL EULER ASSIGNMENT RELION 3.1.1
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION