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Structure of Chloroflexus aggregans flavin based fluorescent protein (CagFbFP) Q148V variant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RHF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.2 M Magnesium chloride hexahydrate
0.1 M TRIS hydrochloride pH 8.5
30% w/v Polyethylene glycol 4,000
Crystal Properties Matthews coefficient Solvent content 2.32 46.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.799 α = 90 b = 109.386 β = 90 c = 39.018 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-05-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 11.2C 1.000 ELETTRA 11.2C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 109.39 98 1 18.3 14.1 45300
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 0.412
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.4 54.753 45237 2217 97.772 0.144 0.1422 0.1855 0.18 18.639
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.044 0.531 -0.574
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.86 r_dihedral_angle_3_deg 10.49 r_dihedral_angle_2_deg 7.374 r_dihedral_angle_1_deg 6.386 r_rigid_bond_restr 5.069 r_scangle_it 4.525 r_scangle_other 4.523 r_lrange_it 4.332 r_lrange_other 4.226 r_scbond_it 3.725
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.86 r_dihedral_angle_3_deg 10.49 r_dihedral_angle_2_deg 7.374 r_dihedral_angle_1_deg 6.386 r_rigid_bond_restr 5.069 r_scangle_it 4.525 r_scangle_other 4.523 r_lrange_it 4.332 r_lrange_other 4.226 r_scbond_it 3.725 r_scbond_other 3.65 r_mcangle_it 2.597 r_mcangle_other 2.597 r_mcbond_it 2.489 r_mcbond_other 2.489 r_angle_refined_deg 0.903 r_symmetry_xyhbond_nbd_refined 0.359 r_angle_other_deg 0.337 r_xyhbond_nbd_refined 0.243 r_nbd_refined 0.239 r_symmetry_nbd_refined 0.22 r_nbd_other 0.206 r_symmetry_nbd_other 0.205 r_nbtor_refined 0.18 r_symmetry_nbtor_other 0.084 r_chiral_restr 0.045 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.002 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1593 Nucleic Acid Atoms Solvent Atoms 281 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing